Category Archives: toolkits

Using Bibtex in MS Word 2015 (Mac OS)

BibTeX is reference management software for formatting lists of references. It makes it easy to cite sources in a consistent manner. However, BibTex is typically used together with the LaTeX document preparation system.

On the other hand, Microsoft Word is still the most commonly used text editor and used in the group to share documents. Thus, I use BibTex to manage the bibliography and use MS Word to write documents.
One of the most famous reference manager software integrated in Word is EndNot, but unfortunately it is a very expensive and not open-source software. In Windows OS, there is a awesome plug-in called “Bib4Word”, but it is not usable in Max OS.

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How to use Whatizit Web Services in Java

Whatizit is a text processing system that allows you to do textmining tasks on text. It is also available as a Web Service whose underlying idea is to ensure that software from various sources work well together. Whatizit is built on open standards of Simple Object Access Protocol (SOAP) and Web Services Description Language (WSDL). For the transport layer itself, Web Services uses most of the commonly available network protocols, especially Hypertext Transfer Protocol (HTTP). For more information on WSDL please refer to the W3C WSDL v1.1 Document.

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How to convert sourcecode to HTML, RTF, SVG, etc.

I am working on my paper which needs a piece of XML to syntax highlighted. I’ve found Sublime with “Copy as RTF” plugins is useful, but as a programmer I prefer something that being done via commend line, and more importantly being easily customizable.

So I did a some searches and came across highlight. To install it on Ubuntu is quite simple

sudo apt-get install highlight

Then I can use highlight to convert the XML file to RTF and copy it to the paper I am working on.

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Resolve coreference using Stanford CoreNLP

Coreference resolution is the task of finding all expressions that refer to the same entity in a text. Stanford CoreNLP coreference resolution system is the state-of-the-art system to resolve coreference in the text. To use the system, we usually create a pipeline, which requires tokenization, sentence splitting, part-of-speech tagging, lemmarization, named entity recoginition, and parsing. However sometimes, we use others tools for preprocessing, particulaly when we are working on a specific domain. In these cases, we need a stand-alone coreference resolution system. This post demenstrates how to create such a system using Stanford CoreNLP.

Load properties

In general, we can just create an empty Properties, because the Stanford CoreNLP tool can automatically load the default one in the model jar file, which is under edu.stanford.nlp.pipeline.

In other cases, we would like to use specific properties. The following code shows one example of loading the property file from the working directory.

private static final String PROPS_SUFFIX = ".properties";

  private Properties loadProperties(String name) {
    return loadProperties(name, 
       Thread.currentThread().getContextClassLoader());
  }
  
  private Properties loadProperties(String name, ClassLoader loader) {
    if (name.endsWith(PROPS_SUFFIX))
      name = name.substring(0, name.length() - PROPS_SUFFIX.length());
    name = name.replace('.', '/');
    name += PROPS_SUFFIX;
    Properties result = null;

    // Returns null on lookup failures
    System.err.println("Searching for resource: " + name);
    InputStream in = loader.getResourceAsStream(name);
    try {
      if (in != null) {
        InputStreamReader reader = new InputStreamReader(in, "utf-8");
        result = new Properties();
        result.load(reader); // Can throw IOException
      }
    } catch (IOException e) {
      result = null;
    } finally {
      IOUtils.closeIgnoringExceptions(in);
    }

    return result;
  }

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How to view differences of branches with meld?

git-meld is a git command that allows you to compare and edit treeishs between revisions using meld or any other diff tool that supports directory comparison. git meld is a frontend to git diff and accepts the same options and arguments.

It is essentially an extended git-difftool for tools that support comparing directories rather than having git call the external tool for every file that has changed.

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